3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03650

Details:

PFam ID : PF03650

PFam Domain Description : Uncharacterised protein family (UPF0041)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 396

Average sequence length: 103.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03650	C4JL76_UNCRE_43_76	13.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03650	Q01H45_OSTTA_96_178	97.7

Sequence based PCA Plot of the family - PF03650 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=20 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay