3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03648

Details:

PFam ID : PF03648

PFam Domain Description : Glycosyl hydrolase family 67 N-terminus

Number of Sequence in 50% Dataset : 86

Number of Sequence in Full Dataset : 183

Average sequence length: 113.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03648	B9K782_THENN_6_118	97.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03648	E0RL26_PAEP6_15_146	100

Sequence based PCA Plot of the family - PF03648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=36 Length=8
Motif2 Start=88 Length=8
Motif3 Start=114 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay