3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03645

Details:

PFam ID : PF03645

PFam Domain Description : Tctex-1 family

Number of Sequence in 50% Dataset : 133

Number of Sequence in Full Dataset : 374

Average sequence length: 100.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03645	C9AR28_ENTFC_5_83	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03645	Q0UTE9_PHANO_8_132	100

Sequence based PCA Plot of the family - PF03645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=15 Length=8
Motif3 Start=60 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay