3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03644

Details:

PFam ID : PF03644

PFam Domain Description : Glycosyl hydrolase family 85

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 171

Average sequence length: 294.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03644	C9AR28_ENTFC_5_83	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03644	E6ZXN2_9BASI_99_506	100

Sequence based PCA Plot of the family - PF03644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=203 Length=8
Motif2 Start=98 Length=11
Motif3 Start=174 Length=8
Motif4 Start=310 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay