3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03643

Details:

PFam ID : PF03643

PFam Domain Description : Vacuolar protein sorting-associated protein 26

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 190

Average sequence length: 237

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03643	E6RBS1_CRYGW_8_172	52

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03643	E9PRT4_HUMAN_6_80	100

Sequence based PCA Plot of the family - PF03643 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=11
Motif2 Start=191 Length=8
Motif3 Start=97 Length=8
Motif4 Start=212 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay