3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03639

Details:

PFam ID : PF03639

PFam Domain Description : Glycosyl hydrolase family 81

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 227

Average sequence length: 519.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03639	A5Z5K2_9FIRM_355_960	85.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03639	F0XHN3_9PEZI_614_1358	100

Sequence based PCA Plot of the family - PF03639 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=44 Length=8
Motif2 Start=504 Length=17
Motif3 Start=24 Length=11
Motif4 Start=445 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay