3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03638

Details:

PFam ID : PF03638

PFam Domain Description : Tesmin/TSO1-like CXC domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 339

Average sequence length: 40.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03638	B6SGD2_MAIZE_66_106	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03638	A8J791_CHLRE_69_91	100

Sequence based PCA Plot of the family - PF03638 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=13 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay