3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03637

Details:

PFam ID : PF03637

PFam Domain Description : Mob1/phocein family

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 344

Average sequence length: 152.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03637	B6SGD2_MAIZE_66_106	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03637	D2VL93_NAEGR_38_222	100

Sequence based PCA Plot of the family - PF03637 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=21
Motif2 Start=1 Length=8
Motif3 Start=79 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay