3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03635

Details:

PFam ID : PF03635

PFam Domain Description : Vacuolar protein sorting-associated protein 35

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 187

Average sequence length: 609.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03635	B6SGD2_MAIZE_66_106	80.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03635	D3B6C8_POLPA_377_794	99.4

Sequence based PCA Plot of the family - PF03635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=34 Length=8
Motif2 Start=10 Length=11
Motif3 Start=1 Length=8
Motif4 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay