3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03634

Details:

PFam ID : PF03634

PFam Domain Description : TCP family transcription factor

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 842

Average sequence length: 124.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03634	C5RBH9_WEIPA_709_766	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03634	Q7XXW5_MIMGU_1_55	97.9

Sequence based PCA Plot of the family - PF03634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=8
Motif2 Start=18 Length=8
Motif3 Start=141 Length=26

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay