3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03633

Details:

PFam ID : PF03633

PFam Domain Description : Glycosyl hydrolase family 65, C-terminal domain

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 408

Average sequence length: 52.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03633	C5RBH9_WEIPA_709_766	91.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03633	C5RBH9_WEIPA_709_766	99.2

Sequence based PCA Plot of the family - PF03633 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=37 Length=8
Motif2 Start=28 Length=8
Motif3 Start=19 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay