3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03632

Details:

PFam ID : PF03632

PFam Domain Description : Glycosyl hydrolase family 65 central catalytic domain

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 532

Average sequence length: 357.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03632	A7ARM4_BABBO_207_413	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03632	Q13FJ6_BURXL_325_737	100

Sequence based PCA Plot of the family - PF03632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=13 Length=11
Motif2 Start=67 Length=8
Motif3 Start=1 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay