3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03631

Details:

PFam ID : PF03631

PFam Domain Description : Virulence factor BrkB

Number of Sequence in 50% Dataset : 485

Number of Sequence in Full Dataset : 1664

Average sequence length: 249.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03631	A7ARM4_BABBO_207_413	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03631	E1M0V3_STRMT_22_180	99.9

Sequence based PCA Plot of the family - PF03631 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=9 Length=23
Motif3 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay