3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03630

Details:

PFam ID : PF03630

PFam Domain Description : Fumble

Number of Sequence in 50% Dataset : 91

Number of Sequence in Full Dataset : 303

Average sequence length: 258.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03630	A7ARM4_BABBO_207_413	57.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03630	E6ZWD1_9BASI_49_283	100

Sequence based PCA Plot of the family - PF03630 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=108 Length=8
Motif2 Start=195 Length=8
Motif3 Start=87 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay