3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03629

Details:

PFam ID : PF03629

PFam Domain Description : Domain of unknown function (DUF303)

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 658

Average sequence length: 281.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03629	C4RYC8_YERBE_250_360	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03629	A6DGB6_9BACT_333_497	99.8

Sequence based PCA Plot of the family - PF03629 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=513 Length=8
Motif3 Start=278 Length=8
Motif4 Start=410 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay