3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03625

Details:

PFam ID : PF03625

PFam Domain Description : Domain of unknown function DUF302

Number of Sequence in 50% Dataset : 83

Number of Sequence in Full Dataset : 504

Average sequence length: 63.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03625	Q30QZ4_SULDN_51_124	53.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03625	D6XXM3_BACIE_25_97	100

Sequence based PCA Plot of the family - PF03625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay