3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03623

Details:

PFam ID : PF03623

PFam Domain Description : Focal adhesion targeting region

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 63

Average sequence length: 105.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03623	C4Q506_SCHMA_845_971	15.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03623	E4X0J3_OIKDI_164_297	95.1

Sequence based PCA Plot of the family - PF03623 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay