3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03621

Details:

PFam ID : PF03621

PFam Domain Description : MbtH-like protein

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 341

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03621	A8NM27_COPC7_167_303	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03621	D5QVC3_METTR_2_51	98.2

Sequence based PCA Plot of the family - PF03621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay