3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03618

Details:

PFam ID : PF03618

PFam Domain Description : Kinase/pyrophosphorylase

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 540

Average sequence length: 247.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03618	A8NM27_COPC7_167_303	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03618	B7G989_PHATC_88_396	100

Sequence based PCA Plot of the family - PF03618 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=301 Length=8
Motif2 Start=234 Length=11
Motif3 Start=1 Length=11
Motif4 Start=183 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay