3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03607

Details:

PFam ID : PF03607

PFam Domain Description : Doublecortin

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 230

Average sequence length: 59.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03607	E4X3X6_OIKDI_312_378	17.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03607	E4X3X6_OIKDI_312_378	100

Sequence based PCA Plot of the family - PF03607 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=27 Length=8
Motif3 Start=8 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay