3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03606

Details:

PFam ID : PF03606

PFam Domain Description : C4-dicarboxylate anaerobic carrier

Number of Sequence in 50% Dataset : 181

Number of Sequence in Full Dataset : 641

Average sequence length: 420.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03606	A2DEM1_TRIVA_13_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03606	D1Y3H5_9BACT_34_437	99.8

Sequence based PCA Plot of the family - PF03606 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay