3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03605

Details:

PFam ID : PF03605

PFam Domain Description : Anaerobic c4-dicarboxylate membrane transporter

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 283

Average sequence length: 327.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03605	A2DEM1_TRIVA_13_48	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03605	Q97DH7_CLOAB_5_371	100

Sequence based PCA Plot of the family - PF03605 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay