3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03604

Details:

PFam ID : PF03604

PFam Domain Description : DNA directed RNA polymerase, 7 kDa subunit

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 113

Average sequence length: 31.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03604	A2DEM1_TRIVA_13_48	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03604	C1G4C4_PARBD_34_60	100

Sequence based PCA Plot of the family - PF03604 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay