3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03603

Details:

PFam ID : PF03603

PFam Domain Description : DNA polymerase III psi subunit

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 101

Average sequence length: 124.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03603	A6D233_9VIBR_1_142	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03603	A6D233_9VIBR_1_142	100

Sequence based PCA Plot of the family - PF03603 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=8 Length=17
Motif3 Start=132 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay