3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03602

Details:

PFam ID : PF03602

PFam Domain Description : Conserved hypothetical protein 95

Number of Sequence in 50% Dataset : 233

Number of Sequence in Full Dataset : 1378

Average sequence length: 174.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03602	B9RBJ8_RICCO_284_407	91.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03602	A5WDL0_PSYWF_37_237	100

Sequence based PCA Plot of the family - PF03602 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=116 Length=11
Motif2 Start=1 Length=24
Motif3 Start=54 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay