3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03601

Details:

PFam ID : PF03601

PFam Domain Description : Conserved hypothetical protein 698

Number of Sequence in 50% Dataset : 116

Number of Sequence in Full Dataset : 823

Average sequence length: 296.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03601	A7HKA8_FERNB_25_381	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03601	D6XZK5_BACIE_12_353	100

Sequence based PCA Plot of the family - PF03601 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=74 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay