3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03600

Details:

PFam ID : PF03600

PFam Domain Description : Citrate transporter

Number of Sequence in 50% Dataset : 548

Number of Sequence in Full Dataset : 2483

Average sequence length: 348.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03600	A7HKA8_FERNB_25_381	83.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03600	Q2BIE8_9GAMM_57_578	93.8

Sequence based PCA Plot of the family - PF03600 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=59 Length=8
Motif2 Start=291 Length=8
Motif3 Start=334 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay