3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03599

Details:

PFam ID : PF03599

PFam Domain Description : CO dehydrogenase/acetyl-CoA synthase delta subunit

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 166

Average sequence length: 298.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03599	Q2FQG1_METHJ_76_467	73.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03599	Q2FQG1_METHJ_76_467	100

Sequence based PCA Plot of the family - PF03599 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=24 Length=18
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay