3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03598

Details:

PFam ID : PF03598

PFam Domain Description : CO dehydrogenase/acetyl-CoA synthase complex beta subunit

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 117

Average sequence length: 300.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03598	B8FZT4_DESHD_44_241	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03598	D3RX82_FERPA_11_359	100

Sequence based PCA Plot of the family - PF03598 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=86 Length=8
Motif2 Start=30 Length=11
Motif3 Start=47 Length=8
Motif4 Start=143 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay