3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03597

Details:

PFam ID : PF03597

PFam Domain Description : Cytochrome oxidase maturation protein cbb3-type

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 301

Average sequence length: 44.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03597	C0A783_9BACT_13_57	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03597	D6YTA7_WADCW_1_43	99.6

Sequence based PCA Plot of the family - PF03597 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8
Motif4 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay