3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03596

Details:

PFam ID : PF03596

PFam Domain Description : Cadmium resistance transporter

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 150

Average sequence length: 180.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03596	B1KXD8_CLOBM_12_220	84.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03596	B1KXD8_CLOBM_12_220	100

Sequence based PCA Plot of the family - PF03596 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=187 Length=8
Motif3 Start=1 Length=8
Motif4 Start=127 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay