3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03595

Details:

PFam ID : PF03595

PFam Domain Description : C4-dicarboxylate transporter/malic acid transport protein

Number of Sequence in 50% Dataset : 223

Number of Sequence in Full Dataset : 782

Average sequence length: 297.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03595	F0ND58_SULIR_23_303	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03595	A3JD74_9ALTE_6_147	100

Sequence based PCA Plot of the family - PF03595 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=46 Length=8
Motif2 Start=147 Length=8
Motif3 Start=76 Length=11
Motif4 Start=3 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay