3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03592

Details:

PFam ID : PF03592

PFam Domain Description : Terminase small subunit

Number of Sequence in 50% Dataset : 152

Number of Sequence in Full Dataset : 422

Average sequence length: 146.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03592	D8FGH8_9FIRM_1_73	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03592	PACK_BPCPT_7_106	100

Sequence based PCA Plot of the family - PF03592 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay