3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03590

Details:

PFam ID : PF03590

PFam Domain Description : Aspartate-ammonia ligase

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 239

Average sequence length: 230.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03590	D8FGH8_9FIRM_1_73	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03590	Q1IU69_ACIBL_35_290	99.5

Sequence based PCA Plot of the family - PF03590 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=5 Length=24
Motif2 Start=44 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay