3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03589

Details:

PFam ID : PF03589

PFam Domain Description : Antitermination protein

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 94

Average sequence length: 92.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03589	D8A235_ECOLX_14_111	27.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03589	B4T7T2_SALHS_1_50	53

Sequence based PCA Plot of the family - PF03589 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=37 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay