3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03588

Details:

PFam ID : PF03588

PFam Domain Description : Leucyl/phenylalanyl-tRNA protein transferase

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 613

Average sequence length: 170.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03588	A7AMI9_BABBO_5_216	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03588	E4TX12_SULKY_49_228	100

Sequence based PCA Plot of the family - PF03588 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=58 Length=11
Motif2 Start=123 Length=8
Motif3 Start=74 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay