3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03585

Details:

PFam ID : PF03585

PFam Domain Description : Herpesvirus ICP4-like protein C-terminal region

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 20

Average sequence length: 341.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03585	A9QUK0_HHV3_1_88	80

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03585	Q9DH52_MEHV1_1711_2139	100

Sequence based PCA Plot of the family - PF03585 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=18
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay