3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03584

Details:

PFam ID : PF03584

PFam Domain Description : Herpesvirus ICP4-like protein N-terminal region

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 18

Average sequence length: 166

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03584	Q9E1F1_MEHV1_1082_1257	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03584	Q9E1F1_MEHV1_1082_1257	100

Sequence based PCA Plot of the family - PF03584 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=49 Length=8
Motif2 Start=148 Length=8
Motif3 Start=4 Length=21

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay