3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03581

Details:

PFam ID : PF03581

PFam Domain Description : Herpesvirus UL33-like protein

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 36

Average sequence length: 75

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03581	TRM2_HHV6U_26_99	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03581	Q69117_EBVG_45_120	100

Sequence based PCA Plot of the family - PF03581 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay