3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03578

Details:

PFam ID : PF03578

PFam Domain Description : HGWP repeat

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 357

Average sequence length: 27.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03578	Q339B4_ORYSJ_11_24	33.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03578	Q5WMT6_ORYSJ_416_435	93.2

Sequence based PCA Plot of the family - PF03578 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay