3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03562

Details:

PFam ID : PF03562

PFam Domain Description : MltA specific insert domain

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 346

Average sequence length: 146.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03562	A1UW92_BURMS_1_29	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03562	C0QKG8_DESAH_128_287	100

Sequence based PCA Plot of the family - PF03562 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=131 Length=8
Motif2 Start=82 Length=11
Motif3 Start=12 Length=11
Motif4 Start=152 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay