3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03561

Details:

PFam ID : PF03561

PFam Domain Description : Allantoicase repeat

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 392

Average sequence length: 142.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03561	Q4YB29_PLABA_97_277	82.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03561	B8C100_THAPS_13_198	100

Sequence based PCA Plot of the family - PF03561 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=102 Length=8
Motif3 Start=141 Length=8
Motif4 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay