3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03557

Details:

PFam ID : PF03557

PFam Domain Description : Bunyavirus glycoprotein G1

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 66

Average sequence length: 619.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03557	Q3Y592_WASMV_612_1013	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03557	Q678K8_BUNYW_501_1356	100

Sequence based PCA Plot of the family - PF03557 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=28
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay