3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03556

Details:

PFam ID : PF03556

PFam Domain Description : Cullin binding

Number of Sequence in 50% Dataset : 60

Number of Sequence in Full Dataset : 218

Average sequence length: 117.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03556	D5GNL3_TUBMM_191_335	98.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03556	A5E066_LODEL_9_168	100

Sequence based PCA Plot of the family - PF03556 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=148 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay