3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03555

Details:

PFam ID : PF03555

PFam Domain Description : Influenza Matrix protein (M1)

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 28.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03555	B7TPY0_9BETA_49_131	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03555	NS1_INCHY_6_62	100

Sequence based PCA Plot of the family - PF03555 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay