3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03553

Details:

PFam ID : PF03553

PFam Domain Description : Na+/H+ antiporter family

Number of Sequence in 50% Dataset : 321

Number of Sequence in Full Dataset : 2075

Average sequence length: 252.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03553	Q73PP2_TREDE_162_471	76.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03553	D4J1I4_BUTFI_174_338	99.4

Sequence based PCA Plot of the family - PF03553 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay