3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03551

Details:

PFam ID : PF03551

PFam Domain Description : Transcriptional regulator PadR-like family

Number of Sequence in 50% Dataset : 215

Number of Sequence in Full Dataset : 2605

Average sequence length: 72.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03551	D9V417_9ACTO_27_80	94.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03551	D2RQ38_HALTV_29_98	100

Sequence based PCA Plot of the family - PF03551 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=62 Length=8
Motif3 Start=9 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay