3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03550

Details:

PFam ID : PF03550

PFam Domain Description : Outer membrane lipoprotein LolB

Number of Sequence in 50% Dataset : 99

Number of Sequence in Full Dataset : 289

Average sequence length: 152.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03550	F0ECI7_9PSED_1_56	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03550	F1VW35_9BURK_36_199	100

Sequence based PCA Plot of the family - PF03550 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=77 Length=8
Motif2 Start=21 Length=8
Motif3 Start=5 Length=8
Motif4 Start=114 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay