3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03548

Details:

PFam ID : PF03548

PFam Domain Description : Outer membrane lipoprotein carrier protein LolA

Number of Sequence in 50% Dataset : 301

Number of Sequence in Full Dataset : 819

Average sequence length: 158.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03548	Q1V317_VIBAL_37_97	86.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03548	Q1V8K0_VIBAL_1_85	100

Sequence based PCA Plot of the family - PF03548 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=161 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay