3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03547

Details:

PFam ID : PF03547

PFam Domain Description : Membrane transport protein

Number of Sequence in 50% Dataset : 1144

Number of Sequence in Full Dataset : 3711

Average sequence length: 187.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03547	E3K992_PUCGT_46_465	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03547	D6KID4_9FIRM_1_296	93.9

Sequence based PCA Plot of the family - PF03547 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=338 Length=8
Motif4 Start=42 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay